Instructions | Downloads | Sample output | License | Contact |
HSA is a flexible tool that can jointly analyze multiple contact maps from Hi-C experiments to infer the 3D chromatin structure of the genome.
C, Zhang Y, Ouyang Z. (2016) HSA: integrating multi-track Hi-C data
for genome-scale reconstruction of 3D chromatin structure. Genome Biology, 17:40.
How to prepare the
How to run HSA
How to interpret the results
The source code of HSA is released under the GNU General Public License (GPL), an open source license compliant with the Open Source Initiative (OSI).
Zhengqing Ouyang: zhengqing.ouyang AT jax.org