HSA: integrating multi-track Hi-C data for genome-scale reconstruction of 3D chromatin structure

Instructions | Downloads | Sample output | License | Contact |



HSA is a flexible tool that can jointly analyze multiple contact maps from Hi-C experiments to infer the 3D chromatin structure of the genome.

Citation: Zou C, Zhang Y, Ouyang Z. (2016) HSA: integrating multi-track Hi-C data for genome-scale reconstruction of 3D chromatin structure. Genome Biology, 17:40.

Instructions

How to prepare the data
How to run HSA
How to interpret the results


Downloads

Source code
Data

Sample output



License

The source code of HSA is released under the GNU General Public License (GPL), an open source license compliant with the Open Source Initiative (OSI).

Contact

Zhengqing Ouyang: zhengqing.ouyang AT jax.org